IL_7MDZ_061

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

7MDZ|1|5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_061 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1115

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7MDZ|1|5|A|1723
7MDZ|1|5|G|1724
7MDZ|1|5|U|1725
*
7MDZ|1|5|A|1838
7MDZ|1|5|U|1839

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain Q

Ribosomal protein L18

Chain T

eL21

Chain b

60S ribosomal protein L29