3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AA*UUU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_063 not in the Motif Atlas
Homologous match to IL_8C3A_042
Geometric discrepancy: 0.0693
The information below is about IL_8C3A_042
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

7MDZ|1|5|A|1737
7MDZ|1|5|A|1738
*
7MDZ|1|5|U|1790
7MDZ|1|5|U|1791
7MDZ|1|5|U|1792

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
Ribosomal_L18_c domain-containing protein
Chain I
60S ribosomal protein L10
Chain T
eL21

Coloring options:


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