IL_7MDZ_067

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_067 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.2528

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7MDZ|1|5|G|1753
7MDZ|1|5|U|1754
7MDZ|1|5|C|1755
7MDZ|1|5|U|1756
*
7MDZ|1|5|A|1776
7MDZ|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein