IL_7MDZ_069

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

7MDZ|1|5|G|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_069 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3851

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7MDZ|1|5|C|1814
7MDZ|1|5|G|1815
7MDZ|1|5|C|1816
*
7MDZ|1|5|G|1823
7MDZ|1|5|G|1824

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

60S ribosomal protein L29