IL_7MDZ_069
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGC*GG
- Length
- 5 nucleotides
- Bulged bases
- 7MDZ|1|5|G|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_069 not in the Motif Atlas
- Geometric match to IL_4V88_442
- Geometric discrepancy: 0.3851
- The information below is about IL_4V88_442
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
7MDZ|1|5|C|1814
7MDZ|1|5|G|1815
7MDZ|1|5|C|1816
*
7MDZ|1|5|G|1823
7MDZ|1|5|G|1824
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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