3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_073 not in the Motif Atlas
Geometric match to IL_7RQB_037
Geometric discrepancy: 0.1227
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

7MDZ|1|5|C|1911
7MDZ|1|5|G|1912
7MDZ|1|5|C|1913
7MDZ|1|5|C|1914
7MDZ|1|5|C|1915
7MDZ|1|5|G|1916
7MDZ|1|5|A|1917
7MDZ|1|5|U|1918
*
7MDZ|1|5|G|2064
7MDZ|1|5|G|2065

Current chains

Chain 5
28S rRNA

Nearby chains

Chain F
60S ribosomal protein L7
Chain O
uL13
Chain S
60S ribosomal protein L18a
Chain f
eL33

Coloring options:


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