IL_7MDZ_080

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUG*CUCAC

Length

42 nucleotides

Bulged bases

7MDZ|1|5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|G|1969
7MDZ|1|5|A|1970
7MDZ|1|5|U|1971
7MDZ|1|5|G|1972
7MDZ|1|5|G|1973
7MDZ|1|5|U|1974
7MDZ|1|5|G|1975
7MDZ|1|5|G|1976
7MDZ|1|5|C|1977
7MDZ|1|5|C|1978
7MDZ|1|5|A|1979
7MDZ|1|5|U|1980
7MDZ|1|5|G|1981
7MDZ|1|5|G|1982
7MDZ|1|5|A|1983
7MDZ|1|5|A|1984
7MDZ|1|5|G|1985
7MDZ|1|5|U|1986
7MDZ|1|5|C|1987
7MDZ|1|5|G|1988
7MDZ|1|5|G|1989
7MDZ|1|5|A|1990
7MDZ|1|5|A|1991
7MDZ|1|5|U|1992
7MDZ|1|5|C|1993
7MDZ|1|5|C|1994
7MDZ|1|5|G|1995
7MDZ|1|5|C|1996
7MDZ|1|5|U|1997
7MDZ|1|5|A|1998
7MDZ|1|5|A|1999
7MDZ|1|5|G|2000
7MDZ|1|5|G|2001
7MDZ|1|5|A|2002
7MDZ|1|5|G|2003
7MDZ|1|5|U|2004
7MDZ|1|5|G|2005
*
7MDZ|1|5|C|2014
7MDZ|1|5|U|2015
7MDZ|1|5|C|2016
7MDZ|1|5|A|2017
7MDZ|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains