IL_7MDZ_084
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 7MDZ|1|5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_084 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1436
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7MDZ|1|5|C|2302
7MDZ|1|5|C|2303
7MDZ|1|5|U|2304
7MDZ|1|5|U|2305
7MDZ|1|5|G|2306
7MDZ|1|5|A|2307
7MDZ|1|5|A|2308
7MDZ|1|5|G|2309
*
7MDZ|1|5|U|2329
7MDZ|1|5|G|2330
7MDZ|1|5|G|2331
7MDZ|1|5|A|2332
7MDZ|1|5|G|2333
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain P
- uL22
- Chain Y
- uL24
- Chain e
- eL32
Coloring options: