IL_7MDZ_087

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

7MDZ|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_087 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2348

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7MDZ|1|5|U|2415
7MDZ|1|5|G|2416
7MDZ|1|5|A|2417
7MDZ|1|5|A|2418
7MDZ|1|5|C|2419
*
7MDZ|1|5|G|2427
7MDZ|1|5|A|2428
7MDZ|1|5|A|2429

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain l

eL39