IL_7MDZ_095

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7MDZ|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_095 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.205

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7MDZ|1|5|C|2646
7MDZ|1|5|A|2647
7MDZ|1|5|G|2648
*
7MDZ|1|5|C|2685
7MDZ|1|5|G|2686
7MDZ|1|5|U|2687
7MDZ|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L34