IL_7MDZ_110

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_110 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1894

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7MDZ|1|5|C|3708
7MDZ|1|5|U|3709
7MDZ|1|5|G|3710
*
7MDZ|1|5|C|3741
7MDZ|1|5|G|3742

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8