IL_7MDZ_120
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7MDZ|1|5|G|4084, 7MDZ|1|5|C|4162, 7MDZ|1|5|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_120 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.1884
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7MDZ|1|5|G|4082
7MDZ|1|5|U|4083
7MDZ|1|5|G|4084
7MDZ|1|5|A|4085
7MDZ|1|5|G|4086
7MDZ|1|5|G|4087
7MDZ|1|5|C|4088
*
7MDZ|1|5|G|4161
7MDZ|1|5|C|4162
7MDZ|1|5|U|4163
7MDZ|1|5|C|4164
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- eL23
Coloring options: