IL_7MDZ_130

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_130 not in the Motif Atlas

Homologous match to IL_8C3A_112

Geometric discrepancy: 0.1399

The information below is about IL_8C3A_112

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7MDZ|1|5|U|4403
7MDZ|1|5|U|4404
7MDZ|1|5|G|4405
*
7MDZ|1|5|U|4439
7MDZ|1|5|G|4440

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10