IL_7MDZ_141

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7MDZ|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_141 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3169

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7MDZ|1|5|C|4582
7MDZ|1|5|C|4583
7MDZ|1|5|A|4584
7MDZ|1|5|U|4585
*
7MDZ|1|5|A|4717
7MDZ|1|5|G|4718
7MDZ|1|5|G|4719
7MDZ|1|5|C|4720
7MDZ|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13