IL_7MDZ_146
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_146 not in the Motif Atlas
- Geometric match to IL_3R1C_018
- Geometric discrepancy: 0.1308
- The information below is about IL_3R1C_018
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
7MDZ|1|5|U|4638
7MDZ|1|5|G|4639
7MDZ|1|5|C|4640
*
7MDZ|1|5|G|4659
7MDZ|1|5|G|4660
7MDZ|1|5|G|4661
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain W
- 60S ribosomal protein L24
- Chain d
- eL31
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