3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_146 not in the Motif Atlas
Geometric match to IL_3R1C_018
Geometric discrepancy: 0.1308
The information below is about IL_3R1C_018
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

7MDZ|1|5|U|4638
7MDZ|1|5|G|4639
7MDZ|1|5|C|4640
*
7MDZ|1|5|G|4659
7MDZ|1|5|G|4660
7MDZ|1|5|G|4661

Current chains

Chain 5
28S rRNA

Nearby chains

Chain W
60S ribosomal protein L24
Chain d
eL31

Coloring options:


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