IL_7MDZ_158

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

7MDZ|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_158 not in the Motif Atlas

Homologous match to IL_8C3A_137

Geometric discrepancy: 0.4794

The information below is about IL_8C3A_137

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MDZ|1|5|C|4996
7MDZ|1|5|G|4997
*
7MDZ|1|5|U|5053
7MDZ|1|5|C|5054
7MDZ|1|5|G|5055

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31