IL_7MDZ_181

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_181 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1919

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7MDZ|1|9|U|116
7MDZ|1|9|C|117
7MDZ|1|9|C|118
7MDZ|1|9|U|119
7MDZ|1|9|U|120
7MDZ|1|9|U|121
*
7MDZ|1|9|A|343
7MDZ|1|9|U|344
7MDZ|1|9|U|345
7MDZ|1|9|C|346
7MDZ|1|9|G|347

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

eS8