3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCCUUU*AUUCG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_181 not in the Motif Atlas
Homologous match to IL_4V88_393
Geometric discrepancy: 0.1919
The information below is about IL_4V88_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37842.2
Basepair signature
cWW-cWW-L-R-cWW-cWW-R-L
Number of instances in this motif group
4

Unit IDs

7MDZ|1|9|U|116
7MDZ|1|9|C|117
7MDZ|1|9|C|118
7MDZ|1|9|U|119
7MDZ|1|9|U|120
7MDZ|1|9|U|121
*
7MDZ|1|9|A|343
7MDZ|1|9|U|344
7MDZ|1|9|U|345
7MDZ|1|9|C|346
7MDZ|1|9|G|347

Current chains

Chain 9
18S rRNA

Nearby chains

Chain EE
40S ribosomal protein S4
Chain II
eS8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1597 s