IL_7MDZ_186

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_186 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3376

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7MDZ|1|9|C|188
7MDZ|1|9|U|189
7MDZ|1|9|G|190
7MDZ|1|9|A|191
7MDZ|1|9|C|192
*
7MDZ|1|9|G|207
7MDZ|1|9|G|208
7MDZ|1|9|A|209
7MDZ|1|9|U|210
7MDZ|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8