IL_7MDZ_217

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_217 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.137

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7MDZ|1|9|A|922
7MDZ|1|9|G|923
*
7MDZ|1|9|C|1019
7MDZ|1|9|A|1020
7MDZ|1|9|U|1021
7MDZ|1|9|U|1022

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

uS15

Chain WW

uS8

Chain bb

eS27