IL_7MDZ_224
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_224 not in the Motif Atlas
- Geometric match to IL_4LFB_033
- Geometric discrepancy: 0.0999
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
7MDZ|1|9|C|1047
7MDZ|1|9|G|1048
7MDZ|1|9|A|1049
7MDZ|1|9|A|1050
7MDZ|1|9|G|1051
*
7MDZ|1|9|C|1067
7MDZ|1|9|G|1068
7MDZ|1|9|U|1069
7MDZ|1|9|A|1070
7MDZ|1|9|G|1071
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Ribosomal protein L8
- Chain OO
- uS11
- Chain aa
- 40S ribosomal protein S26
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