IL_7MDZ_235

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_235 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.127

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7MDZ|1|9|G|1270
7MDZ|1|9|C|1271
7MDZ|1|9|C|1272
*
7MDZ|1|9|G|1510
7MDZ|1|9|U|1511
7MDZ|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

S10_plectin domain-containing protein

Chain PP

uS19

Chain dd

eS29

Chain ff

eS31