IL_7MDZ_268
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCCG*CGG
- Length
- 8 nucleotides
- Bulged bases
- 7MDZ|1|5|G|1919, 7MDZ|1|5|C|1921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_268 not in the Motif Atlas
- Geometric match to IL_4M4O_001
- Geometric discrepancy: 0.2492
- The information below is about IL_4M4O_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7MDZ|1|5|U|1918
7MDZ|1|5|G|1919
7MDZ|1|5|C|1920
7MDZ|1|5|C|1921
7MDZ|1|5|G|1922
*
7MDZ|1|5|C|2062
7MDZ|1|5|G|2063
7MDZ|1|5|G|2064
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain M
- 60S ribosomal protein L14
- Chain O
- uL13
- Chain S
- 60S ribosomal protein L18a
- Chain f
- eL33
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