IL_7MDZ_278
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MDZ_278 not in the Motif Atlas
- Geometric match to IL_8VTW_093
- Geometric discrepancy: 0.3214
- The information below is about IL_8VTW_093
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7MDZ|1|9|U|801
7MDZ|1|9|A|802
7MDZ|1|9|C|803
*
7MDZ|1|9|G|860
7MDZ|1|9|A|861
7MDZ|1|9|A|862
7MDZ|1|9|U|863
7MDZ|1|9|A|864
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain HH
- eS7
- Chain LL
- uS17
- Chain WW
- uS8
- Chain XX
- uS12
Coloring options: