IL_7MPJ_002

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

7MPJ|1|A1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.0831

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MPJ|1|A1|A|13
7MPJ|1|A1|U|14
7MPJ|1|A1|C|15
*
7MPJ|1|A4|G|144
7MPJ|1|A4|U|145

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25