3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UUGG*UCUUUGUAA
Length
13 nucleotides
Bulged bases
7MPJ|1|A1|U|249, 7MPJ|1|A1|G|251, 7MPJ|1|A1|U|252
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7MPJ|1|A1|U|168
7MPJ|1|A1|U|169
7MPJ|1|A1|G|170
7MPJ|1|A1|G|171
*
7MPJ|1|A1|U|246
7MPJ|1|A1|C|247
7MPJ|1|A1|U|248
7MPJ|1|A1|U|249
7MPJ|1|A1|U|250
7MPJ|1|A1|G|251
7MPJ|1|A1|U|252
7MPJ|1|A1|A|253
7MPJ|1|A1|A|254

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AG
60S ribosomal protein L8-A
Chain AL
60S ribosomal protein L13-A
Chain Ah
60S ribosomal protein L35-A

Coloring options:

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