IL_7MPJ_011

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUC*GAGUGC

Length

10 nucleotides

Bulged bases

7MPJ|1|A1|G|239, 7MPJ|1|A1|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|A1|G|176
7MPJ|1|A1|U|177
7MPJ|1|A1|U|178
7MPJ|1|A1|C|179
*
7MPJ|1|A1|G|237
7MPJ|1|A1|A|238
7MPJ|1|A1|G|239
7MPJ|1|A1|U|240
7MPJ|1|A1|G|241
7MPJ|1|A1|C|242

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A

Chain Aj

60S ribosomal protein L37-A