IL_7MPJ_013

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

7MPJ|1|A1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_013 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1405

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7MPJ|1|A1|G|337
7MPJ|1|A1|A|338
7MPJ|1|A1|C|339
*
7MPJ|1|A4|G|25
7MPJ|1|A4|U|26

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A