3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAC*GU
Length
5 nucleotides
Bulged bases
7MPJ|1|A1|A|338
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_013 not in the Motif Atlas
Homologous match to IL_8C3A_014
Geometric discrepancy: 0.1405
The information below is about IL_8C3A_014
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7MPJ|1|A1|G|337
7MPJ|1|A1|A|338
7MPJ|1|A1|C|339
*
7MPJ|1|A4|G|25
7MPJ|1|A4|U|26

Current chains

Chain A1
25S rRNA
Chain A4
5.8S rRNA

Nearby chains

Chain AC
60S ribosomal protein L4-A
Chain AY
60S ribosomal protein L26-A

Coloring options:


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