IL_7MPJ_015
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_015 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0633
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7MPJ|1|A1|G|404
7MPJ|1|A1|U|405
7MPJ|1|A1|G|406
7MPJ|1|A1|A|407
7MPJ|1|A1|A|408
7MPJ|1|A1|A|409
7MPJ|1|A1|U|410
*
7MPJ|1|A4|A|13
7MPJ|1|A4|C|14
7MPJ|1|A4|G|15
7MPJ|1|A4|G|16
7MPJ|1|A4|A|17
7MPJ|1|A4|U|18
7MPJ|1|A4|C|19
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ae
- 60S ribosomal protein L32
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