IL_7MPJ_018

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGACAGG*CAUAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|A1|C|435
7MPJ|1|A1|A|436
7MPJ|1|A1|G|437
7MPJ|1|A1|A|438
7MPJ|1|A1|C|439
7MPJ|1|A1|A|440
7MPJ|1|A1|G|494
7MPJ|1|A1|G|495
*
7MPJ|1|A1|C|618
7MPJ|1|A1|A|619
7MPJ|1|A1|U|620
7MPJ|1|A1|A|621
7MPJ|1|A1|A|622
7MPJ|1|A1|U|623
7MPJ|1|A1|G|624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AP

60S ribosomal protein L17-A

Chain Ae

60S ribosomal protein L32

Chain Af

60S ribosomal protein L33-A