IL_7MPJ_082

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(PSU)G*CGAG

Length

7 nucleotides

Bulged bases

7MPJ|1|A1|A|2324

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_082 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2921

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7MPJ|1|A1|C|2128
7MPJ|1|A1|PSU|2129
7MPJ|1|A1|G|2130
*
7MPJ|1|A1|C|2322
7MPJ|1|A1|G|2323
7MPJ|1|A1|A|2324
7MPJ|1|A1|G|2325

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain Ap

60S ribosomal protein L43-A