IL_7MPJ_091

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_091 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1059

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7MPJ|1|A1|G|2276
7MPJ|1|A1|C|2277
*
7MPJ|1|A1|G|2307
7MPJ|1|A1|C|2308
7MPJ|1|A1|A|2309
7MPJ|1|A1|U|2310

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A