IL_7MPJ_098

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7MPJ|1|A1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_098 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0779

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7MPJ|1|A1|U|2423
7MPJ|1|A1|A|2424
7MPJ|1|A1|G|2425
*
7MPJ|1|A1|U|2604
7MPJ|1|A1|G|2605
7MPJ|1|A1|G|2606
7MPJ|1|A1|G|2607

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AN

60S ribosomal protein L15-A

Chain Ao

60S ribosomal protein L42-A