IL_7MPJ_123

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

7MPJ|1|A1|U|3078, 7MPJ|1|A1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_123 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.0717

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7MPJ|1|A1|C|3063
7MPJ|1|A1|U|3064
*
7MPJ|1|A1|A|3077
7MPJ|1|A1|U|3078
7MPJ|1|A1|U|3079
7MPJ|1|A1|G|3080

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ad

60S ribosomal protein L31-A