IL_7MPJ_126

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_126 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1585

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7MPJ|1|A1|A|3168
7MPJ|1|A1|U|3169
7MPJ|1|A1|A|3170
*
7MPJ|1|A1|U|3280
7MPJ|1|A1|U|3281
7MPJ|1|A1|U|3282

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Af

60S ribosomal protein L33-A