IL_7MPJ_130

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

7MPJ|1|A1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_130 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.0947

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7MPJ|1|A1|C|3225
7MPJ|1|A1|A|3226
7MPJ|1|A1|A|3227
7MPJ|1|A1|C|3228
7MPJ|1|A1|G|3229
*
7MPJ|1|A1|U|3258
7MPJ|1|A1|U|3259
7MPJ|1|A1|G|3260

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A