IL_7MPJ_160
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUA(PSU)UU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_160 not in the Motif Atlas
- Geometric match to IL_4V88_393
- Geometric discrepancy: 0.1895
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
7MPJ|1|B5|U|117
7MPJ|1|B5|U|118
7MPJ|1|B5|A|119
7MPJ|1|B5|PSU|120
7MPJ|1|B5|U|121
7MPJ|1|B5|U|122
*
7MPJ|1|B5|A|295
7MPJ|1|B5|U|296
7MPJ|1|B5|U|297
7MPJ|1|B5|C|298
7MPJ|1|B5|A|299
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BI
- 40S ribosomal protein S8-A
Coloring options: