3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUA*UUUUC
Length
8 nucleotides
Bulged bases
7MPJ|1|B5|U|260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_163 not in the Motif Atlas
Geometric match to IL_4V88_397
Geometric discrepancy: 0.1158
The information below is about IL_4V88_397
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7MPJ|1|B5|G|204
7MPJ|1|B5|U|205
7MPJ|1|B5|A|206
*
7MPJ|1|B5|U|259
7MPJ|1|B5|U|260
7MPJ|1|B5|U|261
7MPJ|1|B5|U|262
7MPJ|1|B5|C|263

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BG
40S ribosomal protein S6-A
Chain BI
40S ribosomal protein S8-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1296 s