IL_7MPJ_202

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7MPJ|1|B5|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_202 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.2659

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7MPJ|1|B5|G|1051
7MPJ|1|B5|U|1052
7MPJ|1|B5|G|1053
*
7MPJ|1|B5|C|1066
7MPJ|1|B5|C|1067

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S1-A

Chain BR

40S ribosomal protein S17-A

Chain Bb

40S ribosomal protein S27-A