IL_7MPJ_209

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_209 not in the Motif Atlas

Geometric match to IL_4V88_446

Geometric discrepancy: 0.1009

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7MPJ|1|B5|G|1213
7MPJ|1|B5|U|1214
7MPJ|1|B5|C|1215
*
7MPJ|1|B5|G|1448
7MPJ|1|B5|U|1449
7MPJ|1|B5|U|1450

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29-A

Chain Bf

40S ribosomal protein S31