IL_7MPJ_212

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_212 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1556

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7MPJ|1|B5|G|1270
7MPJ|1|B5|OMG|1271
7MPJ|1|B5|U|1272
*
7MPJ|1|B5|G|1438
7MPJ|1|B5|C|1439
7MPJ|1|B5|C|1440

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

40S ribosomal protein S3

Chain Bh

Suppressor protein STM1