IL_7MPJ_216
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- U(PSU)GG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_216 not in the Motif Atlas
- Geometric match to IL_361D_001
- Geometric discrepancy: 0.3551
- The information below is about IL_361D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
7MPJ|1|B5|U|1289
7MPJ|1|B5|PSU|1290
7MPJ|1|B5|G|1291
7MPJ|1|B5|G|1292
*
7MPJ|1|B5|C|1323
7MPJ|1|B5|G|1324
7MPJ|1|B5|A|1325
7MPJ|1|B5|A|1326
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BC
- 40S ribosomal protein S2
- Chain BD
- 40S ribosomal protein S3
- Chain BR
- 40S ribosomal protein S17-A
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