IL_7MPJ_217

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_217 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.2594

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7MPJ|1|B5|C|1306
7MPJ|1|B5|U|1307
7MPJ|1|B5|G|1308
*
7MPJ|1|B5|C|1317
7MPJ|1|B5|G|1318

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BR

40S ribosomal protein S17-A