IL_7MPJ_236

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_236 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1375

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7MPJ|1|B5|G|1672
7MPJ|1|B5|G|1673
7MPJ|1|B5|C|1674
*
7MPJ|1|B5|G|1727
7MPJ|1|B5|A|1728
7MPJ|1|B5|C|1729

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AW

60S ribosomal protein L24-A

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A