3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
C(4AC)G*CGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_240 not in the Motif Atlas
Geometric match to IL_4WF9_042
Geometric discrepancy: 0.1147
The information below is about IL_4WF9_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7MPJ|1|B5|C|1772
7MPJ|1|B5|4AC|1773
7MPJ|1|B5|G|1774
*
7MPJ|1|B5|C|1787
7MPJ|1|B5|G|1788
7MPJ|1|B5|G|1789

Current chains

Chain B5
18S rRNA

Nearby chains

Chain An
60S ribosomal protein L41-A
Chain BO
40S ribosomal protein S14-A
Chain Ba
40S ribosomal protein S26-A

Coloring options:


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