3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GC(PSU)*GA(PSU)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_260 not in the Motif Atlas
Homologous match to IL_8P9A_330
Geometric discrepancy: 0.4907
The information below is about IL_8P9A_330
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7MPJ|1|A1|G|2824
7MPJ|1|A1|C|2825
7MPJ|1|A1|PSU|2826
*
7MPJ|1|A1|G|2863
7MPJ|1|A1|A|2864
7MPJ|1|A1|PSU|2865

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AI
60S ribosomal protein L10
Chain Ab
60S ribosomal protein L29

Coloring options:


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