IL_7MPJ_260
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC(PSU)*GA(PSU)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_260 not in the Motif Atlas
- Homologous match to IL_8P9A_330
- Geometric discrepancy: 0.4907
- The information below is about IL_8P9A_330
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7MPJ|1|A1|G|2824
7MPJ|1|A1|C|2825
7MPJ|1|A1|PSU|2826
*
7MPJ|1|A1|G|2863
7MPJ|1|A1|A|2864
7MPJ|1|A1|PSU|2865
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AI
- 60S ribosomal protein L10
- Chain Ab
- 60S ribosomal protein L29
Coloring options: