IL_7MPJ_269

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

7MPJ|1|B5|A|707, 7MPJ|1|B5|U|711, 7MPJ|1|B5|G|712, 7MPJ|1|B5|G|714, 7MPJ|1|B5|U|715, 7MPJ|1|B5|C|716, 7MPJ|1|B5|G|729, 7MPJ|1|B5|G|732, 7MPJ|1|B5|A|733, 7MPJ|1|B5|A|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|B5|G|703
7MPJ|1|B5|C|704
7MPJ|1|B5|U|705
7MPJ|1|B5|A|706
7MPJ|1|B5|A|707
7MPJ|1|B5|C|708
7MPJ|1|B5|C|709
7MPJ|1|B5|U|710
7MPJ|1|B5|U|711
7MPJ|1|B5|G|712
7MPJ|1|B5|A|713
7MPJ|1|B5|G|714
7MPJ|1|B5|U|715
7MPJ|1|B5|C|716
7MPJ|1|B5|C|717
*
7MPJ|1|B5|G|723
7MPJ|1|B5|C|724
7MPJ|1|B5|U|725
7MPJ|1|B5|C|726
7MPJ|1|B5|U|727
7MPJ|1|B5|U|728
7MPJ|1|B5|G|729
7MPJ|1|B5|G|730
7MPJ|1|B5|C|731
7MPJ|1|B5|G|732
7MPJ|1|B5|A|733
7MPJ|1|B5|A|734
7MPJ|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A