IL_7MQA_002

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_002 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1456

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7MQA|1|L1|U|26
7MQA|1|L1|A2M|27
7MQA|1|L1|U|28
*
7MQA|1|L1|G|646
7MQA|1|L1|U|647
7MQA|1|L1|A|648

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SI

Ribosome biogenesis protein BMS1 homolog

Chain SR

40S ribosomal protein S23

Chain SY

Probable U3 small nucleolar RNA-associated protein 11