IL_7MQA_007

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*C(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_007 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.1413

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7MQA|1|L1|C|106
7MQA|1|L1|A|107
7MQA|1|L1|G|108
*
7MQA|1|L1|C|353
7MQA|1|L1|OMU|354
7MQA|1|L1|G|355

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L8

40S ribosomal protein S8

Chain LD

40S ribosomal protein S11