IL_7MQA_012

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGAUAAC*GCUAA(OMU)A(OMC)A

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQA|1|L1|U|144
7MQA|1|L1|G|145
7MQA|1|L1|G|146
7MQA|1|L1|A|147
7MQA|1|L1|U|148
7MQA|1|L1|A|149
7MQA|1|L1|A|150
7MQA|1|L1|C|151
*
7MQA|1|L1|G|167
7MQA|1|L1|C|168
7MQA|1|L1|U|169
7MQA|1|L1|A|170
7MQA|1|L1|A|171
7MQA|1|L1|OMU|172
7MQA|1|L1|A|173
7MQA|1|L1|OMC|174
7MQA|1|L1|A|175

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain LF

40S ribosomal protein S24

Chain SP

Small subunit processome component 20 homolog