IL_7MQA_017

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAACC*GGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_017 not in the Motif Atlas

Geometric match to IL_5J7L_010

Geometric discrepancy: 0.3823

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7MQA|1|L1|C|233
7MQA|1|L1|C|234
7MQA|1|L1|A|235
7MQA|1|L1|A|236
7MQA|1|L1|C|237
7MQA|1|L1|C|238
*
7MQA|1|L1|G|279
7MQA|1|L1|G|280
7MQA|1|L1|C|281
7MQA|1|L1|G|282

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6

Chain SP

Small subunit processome component 20 homolog