IL_7MQA_023

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7MQA|1|L1|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_023 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.2676

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MQA|1|L1|C|322
7MQA|1|L1|C|323
*
7MQA|1|L1|G|327
7MQA|1|L1|U|328
7MQA|1|L1|G|329

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L6

40S ribosomal protein S6